STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plav_0937Glutaryl-7-aminocephalosporanic-acid acylase; PFAM: peptidase S45 penicillin amidase; KEGG: penicillin amidase family protein. (724 aa)    
Predicted Functional Partners:
Plav_3074
KEGG: swi:Swit_0600 hypothetical protein.
 
     0.656
Plav_2447
PFAM: peptidase M19 renal dipeptidase; KEGG: mmr:Mmar10_0282 peptidase M19, renal dipeptidase.
 
  
 0.594
Plav_0168
PFAM: DSBA oxidoreductase; KEGG: sil:SPO1494 2-hydroxychromene-2-carboxylate isomerase, putative.
  
     0.590
Plav_0938
SMART: Tetratricopeptide domain protein; KEGG: rpe:RPE_1932 tetratricopeptide TPR_2.
       0.528
Plav_3591
PFAM: peptidase M19 renal dipeptidase; KEGG: sus:Acid_3699 membrane dipeptidase.
 
  
 0.514
Plav_0939
PFAM: Peptidoglycan-binding domain 1 protein; KEGG: dar:Daro_2852 hypothetical protein.
     
 0.435
macB
ABC transporter related; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP- binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
  
 0.415
Your Current Organism:
Parvibaculum lavamentivorans
NCBI taxonomy Id: 402881
Other names: P. lavamentivorans DS-1, Parvibaculum lavamentivorans DS-1, Parvibaculum lavamentivorans str. DS-1, Parvibaculum lavamentivorans strain DS-1
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