STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plav_0958PFAM: GCN5-related N-acetyltransferase; KEGG: dge:Dgeo_1160 GCN5-related N-acetyltransferase. (208 aa)    
Predicted Functional Partners:
Plav_1649
PFAM: Hyaluronidase; KEGG: maq:Maqu_3474 hyaluronidase.
      0.513
Plav_0957
TIGRFAM: aminopeptidase N; PFAM: Peptidase M1 membrane alanine aminopeptidase; KEGG: noc:Noc_1314 peptidase M, neutral zinc metallopeptidase, zinc-binding site.
     
 0.512
Plav_0615
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: sme:SMb21148 putative oxidoreductase protein.
  
   
 0.508
Plav_0654
PFAM: NUDIX hydrolase; KEGG: sco:SCO5600 hypothetical protein.
 
    0.468
Plav_3613
PFAM: peptidase M22 glycoprotease; KEGG: glycoprotease family protein.
  
 
 0.438
Plav_1933
TIGRFAM: galactose-1-phosphate uridylyltransferase; PFAM: galactose-1-phosphate uridyl transferase domain protein; KEGG: ttj:TTHB114 galactose-1-phosphate uridylyltransferase.
  
     0.433
Plav_3348
PFAM: NAD-dependent epimerase/dehydratase; KEGG: sat:SYN_02652 CDP-4-dehydro-6-deoxy-D-gulose 4-reductase.
 
  
 0.416
Your Current Organism:
Parvibaculum lavamentivorans
NCBI taxonomy Id: 402881
Other names: P. lavamentivorans DS-1, Parvibaculum lavamentivorans DS-1, Parvibaculum lavamentivorans str. DS-1, Parvibaculum lavamentivorans strain DS-1
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