Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Plav_1007KEGG: hne:HNE_1549 hypothetical protein. (158 aa)    
Predicted Functional Partners:
Plav_1006
PFAM: NnrS family protein; KEGG: rde:RD1_1694 NnrS protein, putative.
 
     0.695
Plav_3012
PFAM: Ethyl tert-butyl ether degradation EthD; KEGG: rpa:RPA4824 hypothetical protein.
  
     0.545
Plav_1005
KEGG: azo:azo3083 conserved hypothetical membrane protein.
 
     0.493
Plav_3075
KEGG: rpb:RPB_3603 hypothetical protein.
  
     0.439
Your Current Organism:
Parvibaculum lavamentivorans
NCBI taxonomy Id: 402881
Other names: P. lavamentivorans DS-1, Parvibaculum lavamentivorans DS-1, Parvibaculum lavamentivorans str. DS-1, Parvibaculum lavamentivorans strain DS-1
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