STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plav_1126KEGG: eli:ELI_09820 hypothetical protein. (343 aa)    
Predicted Functional Partners:
Plav_1127
KEGG: pau:PA14_37170 hypothetical protein.
 
 
 0.863
Plav_0512
KEGG: abo:ABO_1416 hypothetical protein.
  
   
 0.707
Plav_0023
KEGG: abo:ABO_1416 hypothetical protein.
  
   
 0.704
Plav_3268
KEGG: abo:ABO_1416 hypothetical protein.
  
     0.690
Plav_0168
PFAM: DSBA oxidoreductase; KEGG: sil:SPO1494 2-hydroxychromene-2-carboxylate isomerase, putative.
 
    0.612
Plav_1451
PFAM: beta-lactamase domain protein; KEGG: hne:HNE_1292 metallo-beta-lactamase family protein.
 
     0.585
Plav_0360
Steryl-sulfatase; PFAM: sulfatase; KEGG: hne:HNE_1667 sulfatase family protein.
 
     0.553
Plav_1131
PFAM: sulfatase; KEGG: sulfatase family protein.
 
     0.551
Plav_1631
PFAM: glutamyl-tRNA synthetase class Ic; KEGG: sme:SMc00735 glutamyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.546
Plav_1128
KEGG: hne:HNE_1664 hypothetical protein.
 
     0.535
Your Current Organism:
Parvibaculum lavamentivorans
NCBI taxonomy Id: 402881
Other names: P. lavamentivorans DS-1, Parvibaculum lavamentivorans DS-1, Parvibaculum lavamentivorans str. DS-1, Parvibaculum lavamentivorans strain DS-1
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.