STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plav_1146TIGRFAM: TonB family protein; KEGG: bbt:BBta_2230 energy transducer. (279 aa)    
Predicted Functional Partners:
Plav_0812
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pca:Pcar_0454 TonB-dependent receptor, putative.
   
 
 0.766
Plav_1865
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: nwi:Nwi_3051 TonB-dependent receptor.
  
 
 0.653
Plav_1883
PFAM: TonB-dependent receptor; KEGG: mmr:Mmar10_1609 TonB-dependent receptor.
  
 
 0.653
Plav_3145
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xac:XAC0823 outer membrane hemin receptor.
  
 
 0.653
Plav_2892
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: hha:Hhal_0452 biopolymer transport protein ExbD/TolR.
 
 
 0.613
Plav_2890
PFAM: MotA/TolQ/ExbB proton channel; KEGG: aeh:Mlg_1848 MotA/TolQ/ExbB proton channel.
 
 
 0.601
Plav_0185
TIGRFAM: TonB-dependent hemoglobin/transferrin/lactoferrin family receptor; TonB-dependent heme/hemoglobin receptor family protein; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ana:alr2153 outer membrane heme receptor.
  
 
 0.586
Plav_0374
TIGRFAM: TonB system transport protein ExbD type-1; PFAM: Biopolymer transport protein ExbD/TolR; KEGG: rpd:RPD_2358 biopolymer transport protein ExbD/TolR.
  
 
 0.545
Plav_0997
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: azo:azo0233 putative biopolymer transport protein ExbD.
  
 
 0.545
Plav_0998
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: cvi:CV1986 biopolymer transport exbD transmembrane protein.
  
 
 0.545
Your Current Organism:
Parvibaculum lavamentivorans
NCBI taxonomy Id: 402881
Other names: P. lavamentivorans DS-1, Parvibaculum lavamentivorans DS-1, Parvibaculum lavamentivorans str. DS-1, Parvibaculum lavamentivorans strain DS-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.