STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plav_1163PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: pmy:Pmen_0674 TRAP C4-dicarboxylate transport system permease DctM subunit. (441 aa)    
Predicted Functional Partners:
Plav_1162
PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: pmy:Pmen_0673 tripartite ATP-independent periplasmic transporter, DctQ component.
 
  
 0.958
Plav_1164
PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: pmy:Pmen_0675 TRAP dicarboxylate transporter-DctP subunit.
 
  
 0.896
Plav_2881
PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: mgm:Mmc1_1612 tripartite ATP-independent periplasmic transporter, DctQ component.
  
 0.753
Plav_0459
TRAP dicarboxylate transporter- DctP subunit; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
  
 0.713
Plav_2882
TRAP dicarboxylate transporter- DctP subunit; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
  
 0.692
Plav_2792
PFAM: iron-containing alcohol dehydrogenase; KEGG: hch:HCH_06318 alcohol dehydrogenase, class IV.
 
   
 0.629
Plav_2794
Glutamate--ammonia ligase; PFAM: glutamine synthetase catalytic region; KEGG: mlo:mll3074 glutamine synthetase.
  
     0.527
Plav_2793
PFAM: aldehyde dehydrogenase; KEGG: acr:Acry_2389 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
   
 0.487
Your Current Organism:
Parvibaculum lavamentivorans
NCBI taxonomy Id: 402881
Other names: P. lavamentivorans DS-1, Parvibaculum lavamentivorans DS-1, Parvibaculum lavamentivorans str. DS-1, Parvibaculum lavamentivorans strain DS-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.