STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plav_1232PFAM: CHAD domain containing protein; adenylate cyclase; KEGG: bra:BRADO2821 conserved hypothetical protein; putative adenylate cyclase with a CHAD domain. (508 aa)    
Predicted Functional Partners:
Plav_1231
PFAM: pentapeptide repeat protein; KEGG: pentapeptide repeat family protein.
 
     0.599
hisF
Imidazoleglycerol phosphate synthase, cyclase subunit; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit.
       0.473
hisA
TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; PFAM: histidine biosynthesis protein; KEGG: sme:SMc02570 probable phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase protein.
       0.473
Plav_1287
KEGG: mag:amb0021 hypothetical protein.
  
     0.472
hisH
Imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the synthesis of IGP and AICAR. The resulting ammonia molecule is channeled to the active site of HisF.
       0.470
Plav_1236
KEGG: rpc:RPC_0305 hypothetical protein.
       0.458
Plav_0229
PFAM: cyclic nucleotide-binding; KEGG: mag:amb3736 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase.
  
   
 0.417
Plav_1282
KEGG: rru:Rru_A2211 porin, gram-negative type.
 
 
 
 0.415
Plav_2570
KEGG: rpb:RPB_3777 flagellar basal-body rod protein FlgB.
  
     0.403
Your Current Organism:
Parvibaculum lavamentivorans
NCBI taxonomy Id: 402881
Other names: P. lavamentivorans DS-1, Parvibaculum lavamentivorans DS-1, Parvibaculum lavamentivorans str. DS-1, Parvibaculum lavamentivorans strain DS-1
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