STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plav_1244Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: nar:Saro_0599 transcriptional regulator, LysR family. (316 aa)    
Predicted Functional Partners:
Plav_2223
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rru:Rru_A2257 transcriptional regulator, LysR family.
  
     0.661
Plav_1268
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bte:BTH_I0383 glycine cleavage system transcriptional activator.
  
     0.627
Plav_1964
PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: bra:BRADO6238 glutamate synthase [NADPH] large chain (NADPH-GOGAT).
 
  
 0.584
Plav_1242
PFAM: 2OG-Fe(II) oxygenase; KEGG: bxe:Bxe_B1380 2OG-Fe(II) oxygenase superfamily; Belongs to the iron/ascorbate-dependent oxidoreductase family.
     
 0.553
Plav_1243
KEGG: psa:PST_1996 hypothetical protein.
       0.543
Plav_0822
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pde:Pden_4581 transcriptional regulator, LysR family.
  
     0.525
Plav_1245
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: bmb:BruAb1_2052 hypothetical protein.
  
  
 0.476
Plav_1246
PFAM: Smr protein/MutS2; KEGG: bja:blr0644 hypothetical protein.
       0.448
Plav_1241
KEGG: ret:RHE_PE00123 putative ABC transporter, substrate-binding protein.
     
 0.433
Your Current Organism:
Parvibaculum lavamentivorans
NCBI taxonomy Id: 402881
Other names: P. lavamentivorans DS-1, Parvibaculum lavamentivorans DS-1, Parvibaculum lavamentivorans str. DS-1, Parvibaculum lavamentivorans strain DS-1
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