STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plav_1266Carboxymethylenebutenolidase; PFAM: dienelactone hydrolase; KEGG: carboxymethylenebutenolidase. (231 aa)    
Predicted Functional Partners:
Plav_2252
PFAM: dienelactone hydrolase; KEGG: sal:Sala_2285 carboxymethylenebutenolidase.
  
  
 
0.921
Plav_0792
KEGG: hypothetical protein.
  
  
 0.566
Plav_1264
PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: bja:bll6137 quinone oxidoreductase.
    0.552
Plav_1267
Hypothetical protein.
       0.486
Plav_1265
PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: rpa:RPA1283 homoserine/homoserine lactone/threonine efflux protein.
       0.450
Plav_1262
PFAM: alpha/beta hydrolase fold; KEGG: psa:PST_2434 hydrolase, alpha/beta fold family.
     
 0.441
Plav_1263
PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: hch:HCH_04332 hypothetical protein.
  
    0.423
Your Current Organism:
Parvibaculum lavamentivorans
NCBI taxonomy Id: 402881
Other names: P. lavamentivorans DS-1, Parvibaculum lavamentivorans DS-1, Parvibaculum lavamentivorans str. DS-1, Parvibaculum lavamentivorans strain DS-1
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