STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plav_1282KEGG: rru:Rru_A2211 porin, gram-negative type. (377 aa)    
Predicted Functional Partners:
Plav_2399
PFAM: VacJ family lipoprotein; KEGG: mag:amb0433 surface lipoprotein.
 
 
 
 0.928
Plav_1283
PFAM: sulfotransferase; KEGG: sfr:Sfri_0789 sulfotransferase.
 
  
 0.841
Plav_2100
Hypothetical protein; KEGG: mag:amb1287 lysophospholipase.
  
 
 0.804
tolB
Tol-Pal system beta propeller repeat TolB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
   
 
 0.796
Plav_2051
PFAM: OmpA/MotB domain protein; KEGG: rru:Rru_A3328 OmpA/MotB.
  
 
 0.778
Plav_2481
KEGG: rru:Rru_A0472 rod shape-determining protein MreD.
  
     0.771
Plav_0405
KEGG: mag:amb0319 hypothetical protein.
  
     0.768
Plav_3330
KEGG: mag:amb2845 hypothetical protein.
  
     0.761
Plav_1879
Hypothetical protein; KEGG: noc:Noc_2584 Rickettsia 17 kDa surface antigen.
  
     0.758
Plav_1719
Hypothetical protein; KEGG: mag:amb3928 antifreeze glycopeptide polyprotein precursor.
  
  
 0.745
Your Current Organism:
Parvibaculum lavamentivorans
NCBI taxonomy Id: 402881
Other names: P. lavamentivorans DS-1, Parvibaculum lavamentivorans DS-1, Parvibaculum lavamentivorans str. DS-1, Parvibaculum lavamentivorans strain DS-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.