STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plav_1287KEGG: mag:amb0021 hypothetical protein. (301 aa)    
Predicted Functional Partners:
Plav_2100
Hypothetical protein; KEGG: mag:amb1287 lysophospholipase.
  
     0.771
Plav_0405
KEGG: mag:amb0319 hypothetical protein.
  
     0.767
Plav_2569
KEGG: rru:Rru_A2829 hypothetical protein.
  
     0.726
Plav_2481
KEGG: rru:Rru_A0472 rod shape-determining protein MreD.
  
     0.721
Plav_1282
KEGG: rru:Rru_A2211 porin, gram-negative type.
  
     0.719
Plav_2565
KEGG: mag:amb3499 hypothetical protein.
  
     0.708
Plav_1719
Hypothetical protein; KEGG: mag:amb3928 antifreeze glycopeptide polyprotein precursor.
  
     0.707
Plav_1286
KEGG: mmr:Mmar10_2951 hypothetical protein.
       0.684
Plav_2557
KEGG: mmr:Mmar10_1951 hypothetical protein.
  
     0.677
Plav_0295
KEGG: mag:amb3893 hypothetical protein.
  
     0.666
Your Current Organism:
Parvibaculum lavamentivorans
NCBI taxonomy Id: 402881
Other names: P. lavamentivorans DS-1, Parvibaculum lavamentivorans DS-1, Parvibaculum lavamentivorans str. DS-1, Parvibaculum lavamentivorans strain DS-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.