STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plav_1298PFAM: peptidase C26; KEGG: bte:BTH_II1945 glutamine amidotransferase, class I. (297 aa)    
Predicted Functional Partners:
Plav_1297
Glutamate--putrescine ligase; PFAM: glutamine synthetase catalytic region; KEGG: rru:Rru_A2079 glutamate--ammonia ligase.
 
  
 0.953
Plav_3591
PFAM: peptidase M19 renal dipeptidase; KEGG: sus:Acid_3699 membrane dipeptidase.
     0.884
Plav_2625
PFAM: FAD dependent oxidoreductase; KEGG: rsq:Rsph17025_0863 FAD dependent oxidoreductase.
 
  
 0.800
Plav_1296
PFAM: aminotransferase class-III; KEGG: pfl:PFL_5927 hypothetical protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
  
 0.751
Plav_0955
PFAM: glutamine synthetase catalytic region; KEGG: pau:PA14_03860 putative glutamine synthetase.
 
  
 0.730
Plav_2717
PFAM: glutamine synthetase catalytic region; KEGG: pau:PA14_72850 putative glutamine synthetase.
 
  
 0.723
Plav_0954
PFAM: FAD dependent oxidoreductase; KEGG: cya:CYA_1308 oxidoreductase, FAD-dependent.
 
  
 0.573
Plav_0277
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: csa:Csal_2087 transcriptional regulator, XRE family with cupin sensor protein.
 
  
 0.571
Plav_1299
Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
       0.529
Plav_2794
Glutamate--ammonia ligase; PFAM: glutamine synthetase catalytic region; KEGG: mlo:mll3074 glutamine synthetase.
 
  
 0.505
Your Current Organism:
Parvibaculum lavamentivorans
NCBI taxonomy Id: 402881
Other names: P. lavamentivorans DS-1, Parvibaculum lavamentivorans DS-1, Parvibaculum lavamentivorans str. DS-1, Parvibaculum lavamentivorans strain DS-1
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