STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plav_1321PFAM: Heparinase II/III family protein; KEGG: bja:blr0580 hypothetical protein. (629 aa)    
Predicted Functional Partners:
Plav_1322
PFAM: ribulose-phosphate 3-epimerase; KEGG: nar:Saro_0104 ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
      0.699
Plav_2185
PFAM: protein of unknown function DUF1153; KEGG: rle:RL3754 hypothetical protein.
  
     0.683
Plav_0017
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: bmb:BruAb1_0130 sensor histidine kinase.
  
     0.610
Plav_0296
PFAM: Peptidoglycan-binding domain 1 protein; protein of unknown function DUF1036; KEGG: bja:blr8102 hypothetical protein.
  
     0.536
Plav_1381
KEGG: bov:BOV_0077 hypothetical protein.
  
     0.536
Plav_1352
PFAM: HemY domain protein; KEGG: mes:Meso_3199 HemY-like.
  
     0.511
Plav_0137
TIGRFAM: Double-strand break repair protein AddB; KEGG: mag:amb0421 inactivated superfamily I helicase.
  
     0.501
Plav_0103
PFAM: protein of unknown function DUF1457; KEGG: sme:SMc01000 hypothetical protein.
  
     0.478
Plav_1712
KEGG: bbt:BBta_7564 aerobic cobaltochelatase CobT subunit (cobalamin biosynthesis); TIGRFAM: cobalt chelatase, pCobT subunit; PFAM: Cobalt chelatase CobT subunit; SMART: von Willebrand factor type A.
  
     0.475
Plav_0674
PFAM: protein of unknown function DUF983; KEGG: atc:AGR_C_1409 hypothetical protein.
  
     0.452
Your Current Organism:
Parvibaculum lavamentivorans
NCBI taxonomy Id: 402881
Other names: P. lavamentivorans DS-1, Parvibaculum lavamentivorans DS-1, Parvibaculum lavamentivorans str. DS-1, Parvibaculum lavamentivorans strain DS-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.