STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plav_1335PFAM: GCN5-related N-acetyltransferase; KEGG: sco:SCO1988 hypothetical protein. (147 aa)    
Predicted Functional Partners:
Plav_1334
PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: hne:HNE_0162 CaiB/BaiF CoA-transferase, family III; Belongs to the CoA-transferase III family.
  
    0.670
Plav_1333
KEGG: rru:Rru_A3032 hypothetical protein.
 
     0.552
Plav_1336
PFAM: protein of unknown function DUF1330; KEGG: bja:blr0490 hypothetical protein.
 
     0.545
Plav_3613
PFAM: peptidase M22 glycoprotease; KEGG: glycoprotease family protein.
  
 
 0.438
Plav_1587
PFAM: protein of unknown function DUF1006; KEGG: rsq:Rsph17025_0040 protein of unknown function DUF1006.
  
     0.425
Your Current Organism:
Parvibaculum lavamentivorans
NCBI taxonomy Id: 402881
Other names: P. lavamentivorans DS-1, Parvibaculum lavamentivorans DS-1, Parvibaculum lavamentivorans str. DS-1, Parvibaculum lavamentivorans strain DS-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.