STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plav_1384PFAM: beta-lactamase; KEGG: hne:HNE_1031 putative esterase. (408 aa)    
Predicted Functional Partners:
Plav_1383
KEGG: xac:XAC0836 hypothetical protein.
     
 0.576
Plav_2677
PFAM: Phytanoyl-CoA dioxygenase; KEGG: rpa:RPA0441 hypothetical protein.
  
     0.505
Plav_3154
PFAM: Phytanoyl-CoA dioxygenase; KEGG: eli:ELI_14540 hypothetical protein.
  
     0.467
Plav_1801
PFAM: Carboxymuconolactone decarboxylase; KEGG: mgi:Mflv_4627 carboxymuconolactone decarboxylase.
 
     0.456
Plav_0212
PFAM: Phytanoyl-CoA dioxygenase; KEGG: rpa:RPA0441 hypothetical protein.
  
     0.449
Plav_0772
PFAM: beta-lactamase; KEGG: mtc:MT1771 penicillin-binding protein 4.
  
     0.417
Your Current Organism:
Parvibaculum lavamentivorans
NCBI taxonomy Id: 402881
Other names: P. lavamentivorans DS-1, Parvibaculum lavamentivorans DS-1, Parvibaculum lavamentivorans str. DS-1, Parvibaculum lavamentivorans strain DS-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.