STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plav_1565PFAM: alpha/beta hydrolase fold; KEGG: sus:Acid_2544 alpha/beta hydrolase fold. (363 aa)    
Predicted Functional Partners:
Plav_2623
PFAM: alpha/beta hydrolase fold; KEGG: rha:RHA1_ro03350 probable hydrolase.
  
   
 0.752
Plav_1562
PFAM: aminotransferase class IV; KEGG: rxy:Rxyl_0760 aminotransferase, class IV.
   
 
 0.673
Plav_1564
TIGRFAM: para-aminobenzoate synthase, subunit I; PFAM: Anthranilate synthase component I and chorismate binding protein; Anthranilate synthase component I domain protein; KEGG: rxy:Rxyl_0761 para-aminobenzoate synthase, component I.
     
 0.648
Plav_1563
TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: gbe:GbCGDNIH1_0821 anthranilate synthase component II.
     
 0.644
Plav_1677
PFAM: alpha/beta hydrolase fold; KEGG: sal:Sala_2222 alpha/beta hydrolase fold.
  
     0.599
Plav_0572
PFAM: alpha/beta hydrolase fold; KEGG: swi:Swit_1445 alpha/beta hydrolase fold.
  
   
 0.576
Plav_1569
TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; KEGG: mlo:mll6984 gamma-glutamyltranspeptidase.
 
 
 
 0.561
Plav_1566
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: reu:Reut_A3281 short chain dehydrogenase.
  
   0.532
Plav_0389
PFAM: alpha/beta hydrolase fold; KEGG: sal:Sala_1337 alpha/beta hydrolase fold.
  
   
 0.480
Plav_1567
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rha:RHA1_ro02669 possible enoyl-CoA hydratase.
   
   0.474
Your Current Organism:
Parvibaculum lavamentivorans
NCBI taxonomy Id: 402881
Other names: P. lavamentivorans DS-1, Parvibaculum lavamentivorans DS-1, Parvibaculum lavamentivorans str. DS-1, Parvibaculum lavamentivorans strain DS-1
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