STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plav_1635PFAM: Disulphide bond formation protein DsbB; KEGG: rpc:RPC_0627 disulphide bond formation protein DsbB. (176 aa)    
Predicted Functional Partners:
coq7
Ubiquinone biosynthesis protein COQ7; Catalyzes the hydroxylation of 2-nonaprenyl-3-methyl-6- methoxy-1,4-benzoquinol during ubiquinone biosynthesis.
 
     0.820
Plav_2090
PFAM: protein of unknown function DUF1013; KEGG: bra:BRADO6589 hypothetical protein.
  
     0.672
Plav_1248
PFAM: import inner membrane translocase subunit Tim44; KEGG: nha:Nham_0117 import inner membrane translocase, subunit Tim44.
  
     0.629
Plav_1719
Hypothetical protein; KEGG: mag:amb3928 antifreeze glycopeptide polyprotein precursor.
 
 
 0.622
Plav_0700
PFAM: DSBA oxidoreductase; KEGG: bmb:BruAb1_0518 twin-arginine translocation signal domain protein.
 
 
 0.620
Plav_3281
PFAM: DSBA oxidoreductase; KEGG: mag:amb1392 protein-disulfide isomerase.
 
 
 0.615
guaB
Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
  
 
 0.584
Plav_3080
PFAM: protein of unknown function DUF339; KEGG: rpb:RPB_2851 protein of unknown function DUF339.
  
     0.546
yidC
60 kDa inner membrane insertion protein; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.
  
  
 0.533
Plav_3297
PFAM: NADH:ubiquinone oxidoreductase 17.2 kD subunit; KEGG: rpd:RPD_2418 NADH:ubiquinone oxidoreductase 17.2 kD subunit.
 
     0.515
Your Current Organism:
Parvibaculum lavamentivorans
NCBI taxonomy Id: 402881
Other names: P. lavamentivorans DS-1, Parvibaculum lavamentivorans DS-1, Parvibaculum lavamentivorans str. DS-1, Parvibaculum lavamentivorans strain DS-1
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