STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plav_1656KEGG: sru:SRU_0279 hypothetical protein. (378 aa)    
Predicted Functional Partners:
Plav_1653
KEGG: sru:SRU_1321 hypothetical protein.
 
     0.944
Plav_1655
Hypothetical protein.
       0.792
Plav_1654
Hypothetical protein.
       0.761
Plav_2433
KEGG: rpe:RPE_3493 protein involved in cellulose biosynthesis (CelD)-like protein.
  
     0.621
Plav_2508
PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: mes:Meso_4061 hypothetical protein.
  
     0.442
Plav_1652
PFAM: beta-lactamase domain protein; KEGG: hne:HNE_3461 metallo-beta-lactamase family protein.
       0.431
Your Current Organism:
Parvibaculum lavamentivorans
NCBI taxonomy Id: 402881
Other names: P. lavamentivorans DS-1, Parvibaculum lavamentivorans DS-1, Parvibaculum lavamentivorans str. DS-1, Parvibaculum lavamentivorans strain DS-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.