STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plav_1663PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bja:bll7157 putative glucose 1-dehydrogenase. (242 aa)    
Predicted Functional Partners:
Plav_1661
PFAM: AMP-dependent synthetase and ligase; KEGG: feruloyl-CoA synthase.
  
 
 0.615
Plav_1657
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bja:blr2256 hypothetical oxidoreductase.
 
     0.575
Plav_1662
PFAM: protein of unknown function DUF924; KEGG: xcb:XC_0794 hypothetical protein.
       0.568
Plav_3360
TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; KEGG: mag:amb2105 S-malonyltransferase.
  
 
 0.505
Plav_1660
PFAM: AMP-dependent synthetase and ligase; KEGG: hne:HNE_3427 feruloyl-CoA synthetase.
  
 
 0.473
Plav_1664
KEGG: mmr:Mmar10_2307 hypothetical protein.
       0.453
Plav_0015
PFAM: Ankyrin; KEGG: sru:SRU_2404 hypothetical protein.
   
 0.442
Plav_1069
PFAM: Glutathione S-transferase domain; KEGG: hne:HNE_2566 glutathione S-transferase.
  
 
   0.438
Plav_0360
Steryl-sulfatase; PFAM: sulfatase; KEGG: hne:HNE_1667 sulfatase family protein.
   
 
 0.429
Plav_1131
PFAM: sulfatase; KEGG: sulfatase family protein.
   
 
 0.429
Your Current Organism:
Parvibaculum lavamentivorans
NCBI taxonomy Id: 402881
Other names: P. lavamentivorans DS-1, Parvibaculum lavamentivorans DS-1, Parvibaculum lavamentivorans str. DS-1, Parvibaculum lavamentivorans strain DS-1
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.