Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
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[Homology]
Score
Plav_1663PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bja:bll7157 putative glucose 1-dehydrogenase. (242 aa)    
Predicted Functional Partners:
Plav_1661
PFAM: AMP-dependent synthetase and ligase; KEGG: feruloyl-CoA synthase.
  
   0.608
Plav_1657
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bja:blr2256 hypothetical oxidoreductase.
 
     0.575
Plav_1662
PFAM: protein of unknown function DUF924; KEGG: xcb:XC_0794 hypothetical protein.
       0.568
Plav_1660
PFAM: AMP-dependent synthetase and ligase; KEGG: hne:HNE_3427 feruloyl-CoA synthetase.
  
   0.464
Plav_1664
KEGG: mmr:Mmar10_2307 hypothetical protein.
       0.453
Plav_0015
PFAM: Ankyrin; KEGG: sru:SRU_2404 hypothetical protein.
   
 0.452
Plav_0465
PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.448
Plav_1949
PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: fatty oxidation complex, alpha subunit; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.448
Plav_2211
PFAM: alpha/beta hydrolase fold; KEGG: plu:plu2437 hypothetical protein.
 
  0.444
Plav_1069
PFAM: Glutathione S-transferase domain; KEGG: hne:HNE_2566 glutathione S-transferase.
  
 
   0.430
Your Current Organism:
Parvibaculum lavamentivorans
NCBI taxonomy Id: 402881
Other names: P. lavamentivorans DS-1, Parvibaculum lavamentivorans DS-1, Parvibaculum lavamentivorans str. DS-1, Parvibaculum lavamentivorans strain DS-1
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