STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plav_1691PFAM: nuclease (SNase domain protein); KEGG: mmr:Mmar10_2298 nuclease (SNase domain protein). (272 aa)    
Predicted Functional Partners:
Plav_1692
PFAM: peptidase M48 Ste24p; KEGG: mag:amb0300 putative Zn-dependent protease.
 
     0.842
Plav_1690
Two component transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; response regulator receiver; Sigma-70 region 4 type 2; KEGG: mag:amb3889 response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.
     
 0.610
Plav_2176
TIGRFAM: flagellar export protein FliJ; KEGG: rpc:RPC_4231 flagellar export FliJ.
  
     0.508
Plav_2100
Hypothetical protein; KEGG: mag:amb1287 lysophospholipase.
  
 
   0.494
Plav_3586
PFAM: protein of unknown function UPF0102; KEGG: bra:BRADO0179 hypothetical protein; Belongs to the UPF0102 family.
 
    0.480
Plav_2485
PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: mag:amb1428 superfamily II DNA and RNA helicase; Belongs to the DEAD box helicase family.
    
 0.467
Plav_3252
PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: rsh:Rsph17029_1195 DEAD/DEAH box helicase domain protein; Belongs to the DEAD box helicase family.
    
 0.467
Plav_1719
Hypothetical protein; KEGG: mag:amb3928 antifreeze glycopeptide polyprotein precursor.
  
     0.466
Plav_2910
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
  
  
 0.462
Plav_3330
KEGG: mag:amb2845 hypothetical protein.
  
     0.445
Your Current Organism:
Parvibaculum lavamentivorans
NCBI taxonomy Id: 402881
Other names: P. lavamentivorans DS-1, Parvibaculum lavamentivorans DS-1, Parvibaculum lavamentivorans str. DS-1, Parvibaculum lavamentivorans strain DS-1
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