STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plav_1698PFAM: helicase domain protein; KEGG: rpa:RPA0491 possible MgpS, ATP-dependent helicase. (997 aa)    
Predicted Functional Partners:
Plav_1697
PFAM: RNA-binding S4 domain protein; KEGG: rde:RD1_1823 heat shock protein, putative.
 
     0.821
Plav_0400
PFAM: GcrA cell cycle regulator; KEGG: mmr:Mmar10_0485 GcrA cell cycle regulator.
  
     0.670
Plav_1696
PFAM: protein of unknown function DUF1332; KEGG: rru:Rru_A0076 protein of unknown function DUF1332.
       0.665
Plav_1694
Transcriptional regulator, CarD family; PFAM: transcription factor CarD; KEGG: rpd:RPD_0278 transcription factor CarD.
 
     0.592
Plav_1695
4Fe-4S ferredoxin iron-sulfur binding domain protein; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
       0.553
Plav_1712
KEGG: bbt:BBta_7564 aerobic cobaltochelatase CobT subunit (cobalamin biosynthesis); TIGRFAM: cobalt chelatase, pCobT subunit; PFAM: Cobalt chelatase CobT subunit; SMART: von Willebrand factor type A.
  
     0.532
Plav_1997
PFAM: N-formylglutamate amidohydrolase; KEGG: mag:amb2177 N-formylglutamate amidohydrolase.
  
     0.493
lysS
TIGRFAM: lysyl-tRNA synthetase; PFAM: Lysyl-tRNA synthetase class 1c; KEGG: nwi:Nwi_0151 lysyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
     0.486
Plav_1396
KEGG: rle:RL4534 hypothetical protein.
  
     0.463
Plav_1321
PFAM: Heparinase II/III family protein; KEGG: bja:blr0580 hypothetical protein.
  
     0.445
Your Current Organism:
Parvibaculum lavamentivorans
NCBI taxonomy Id: 402881
Other names: P. lavamentivorans DS-1, Parvibaculum lavamentivorans DS-1, Parvibaculum lavamentivorans str. DS-1, Parvibaculum lavamentivorans strain DS-1
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