STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plav_1726PFAM: Citrate transporter; TrkA-C domain protein; KEGG: mhu:Mhun_0633 TrkA-C. (588 aa)    
Predicted Functional Partners:
Plav_1614
Cation transporter; Low-affinity potassium transport system. Interacts with Trk system potassium uptake protein TrkA; Belongs to the TrkH potassium transport family.
  
 
 0.904
Plav_1727
PFAM: alpha/beta hydrolase fold; Epoxide hydrolase domain protein; KEGG: bcl:ABC1387 epoxide hydrolase 1.
     
 0.784
Plav_1728
PFAM: Epoxide hydrolase domain protein; KEGG: hne:HNE_2052 epoxide hydrolase.
     
 0.784
Plav_3598
Malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+)), Phosphate acetyltransferase; PFAM: phosphate acetyl/butaryl transferase; malic protein domain protein; malic protein NAD-binding; KEGG: sme:SMc01126 NADP-dependent malic enzyme protein.
  
  
 0.737
Plav_2691
TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: rpd:RPD_1436 ATPase, E1-E2 type.
  
  
 0.690
Plav_2273
PFAM: molybdopterin biosynthesis MoaE protein; KEGG: mlo:mlr7915 molybdopterin converting factor, subunit 2.
  
    0.616
Plav_0500
PFAM: TrkA-C domain protein; sodium/hydrogen exchanger; KEGG: aeh:Mlg_0921 sodium/hydrogen exchanger.
 
   
 0.614
Plav_1668
PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: mag:amb3695 sulfate permease and related transporters.
 
  
 0.609
Plav_1143
PFAM: amino acid permease-associated region; KEGG: ppr:PBPRB1917 hypothetical amino acid permease.
  
 
 0.568
Plav_1729
PFAM: major facilitator superfamily MFS_1; KEGG: pat:Patl_3455 major facilitator superfamily MFS_1.
  
  
 0.549
Your Current Organism:
Parvibaculum lavamentivorans
NCBI taxonomy Id: 402881
Other names: P. lavamentivorans DS-1, Parvibaculum lavamentivorans DS-1, Parvibaculum lavamentivorans str. DS-1, Parvibaculum lavamentivorans strain DS-1
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