STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ubiGUbiquinone biosynthesis O-methyltransferase; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the methyltransferase superfamily. UbiG/COQ3 family. (253 aa)    
Predicted Functional Partners:
Plav_1308
TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase FAD-binding; KEGG: rde:RD1_0036 2-octaprenyl-6-methoxyphenol hydroxylase.
 
 
 0.966
coq7
Ubiquinone biosynthesis protein COQ7; Catalyzes the hydroxylation of 2-nonaprenyl-3-methyl-6- methoxy-1,4-benzoquinol during ubiquinone biosynthesis.
   
 0.929
Plav_1325
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sus:Acid_7491 glycosyl transferase, family 2.
  
  
 
0.917
Plav_1324
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: lbl:LBL_1095 methylase/methyltransferase.
  
  
 
0.908
Plav_1740
TIGRFAM: FAD-linked oxidoreductase; PFAM: FAD linked oxidase domain protein; D-arabinono-14-lactone oxidase; KEGG: cvi:CV1040 probable FAD-dependent oxidoreductase.
   
   0.785
Plav_3657
2-polyprenylphenol 6-hydroxylase; Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis. Belongs to the ABC1 family. UbiB subfamily.
  
 0.775
Plav_1741
KEGG: pen:PSEEN3317 cytochrome c.
       0.762
ubiA
4-hydroxybenzoate polyprenyl transferase; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3-octaprenyl-4-hydroxybenzoate.
 
 
 0.708
Plav_2601
PFAM: molybdopterin binding domain; KEGG: mlo:mll0144 hypothetical protein.
      0.670
Plav_3135
PFAM: cyclase/dehydrase; KEGG: pde:Pden_3870 cyclase/dehydrase.
  
   
 0.661
Your Current Organism:
Parvibaculum lavamentivorans
NCBI taxonomy Id: 402881
Other names: P. lavamentivorans DS-1, Parvibaculum lavamentivorans DS-1, Parvibaculum lavamentivorans str. DS-1, Parvibaculum lavamentivorans strain DS-1
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