STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plav_1760PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ajs:Ajs_2100 short-chain dehydrogenase/reductase SDR. (250 aa)    
Predicted Functional Partners:
Plav_0490
3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoAhydratase; PFAM: MaoC domain protein dehydratase; KEGG: rpe:RPE_3528 MaoC domain protein dehydratase.
 
 0.917
Plav_1800
3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoAhydratase; PFAM: MaoC domain protein dehydratase; KEGG: ptr:462019 hydroxysteroid (17-beta) dehydrogenase 4.
 
 0.917
Plav_0813
Cyclohexanone monooxygenase; PFAM: FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rpd:RPD_1860 FAD dependent oxidoreductase.
 
 
 0.911
Plav_1165
KEGG: hne:HNE_1286 cyclododecanone monooxygenase.
 
 
 0.911
Plav_1759
PFAM: AMP-dependent synthetase and ligase; KEGG: eli:ELI_14985 4-coumarate--CoA ligase, putative.
  
 
 0.642
Plav_1762
PFAM: aromatic-ring-hydroxylating dioxygenase beta subunit; KEGG: nar:Saro_3863 aromatic-ring-hydroxylating dioxygenase, beta subunit.
  
  
 0.547
Plav_1761
Rieske (2Fe-2S) domain protein; PFAM: ring hydroxylating dioxygenase alpha subunit; Rieske [2Fe-2S] domain protein; KEGG: nar:Saro_3864 Rieske (2Fe-2S) domain protein.
  
  
 0.525
Plav_3360
TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; KEGG: mag:amb2105 S-malonyltransferase.
 
 
 0.518
Plav_1763
4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate biosynthetic protein PdxA; KEGG: nar:Saro_3862 pyridoxal phosphate biosynthetic protein PdxA; Belongs to the PdxA family.
     
 0.496
Plav_0415
KEGG: tde:TDE1337 hypothetical protein.
 
  
 0.488
Your Current Organism:
Parvibaculum lavamentivorans
NCBI taxonomy Id: 402881
Other names: P. lavamentivorans DS-1, Parvibaculum lavamentivorans DS-1, Parvibaculum lavamentivorans str. DS-1, Parvibaculum lavamentivorans strain DS-1
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