STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plav_1813PFAM: helix-turn-helix domain protein; KEGG: rpc:RPC_3550 transcriptional regulator, XRE family. (80 aa)    
Predicted Functional Partners:
Plav_0324
KEGG: mag:amb3705 hypothetical protein.
  
     0.508
Plav_1812
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: rpe:RPE_4037 transcriptional regulator, XRE family.
       0.477
Plav_1814
PFAM: domain of unknown function DUF1738; KEGG: mlo:mlr6154 antirestriction protein.
       0.427
Plav_0315
PFAM: ParB domain protein nuclease; KEGG: swi:Swit_3672 ParB domain protein nuclease.
  
  
 0.419
Plav_3433
KEGG: bxe:Bxe_A1175 hypothetical protein.
  
     0.415
Your Current Organism:
Parvibaculum lavamentivorans
NCBI taxonomy Id: 402881
Other names: P. lavamentivorans DS-1, Parvibaculum lavamentivorans DS-1, Parvibaculum lavamentivorans str. DS-1, Parvibaculum lavamentivorans strain DS-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.