STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plav_1831KEGG: bbt:BBta_7549 hypothetical protein. (432 aa)    
Predicted Functional Partners:
Plav_1830
KEGG: ajs:Ajs_1271 hypothetical protein.
       0.570
Plav_1829
KEGG: rpe:RPE_2466 hypothetical protein.
       0.503
Plav_1826
PFAM: AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: rpe:RPE_2469 AAA ATPase, central domain protein.
       0.497
Plav_1827
KEGG: rpe:RPE_2468 hypothetical protein.
       0.497
Plav_1828
KEGG: rpe:RPE_2467 hypothetical protein.
       0.497
Plav_2618
PFAM: protein of unknown function DUF427; KEGG: rpb:RPB_3711 protein of unknown function DUF427.
 
     0.418
Your Current Organism:
Parvibaculum lavamentivorans
NCBI taxonomy Id: 402881
Other names: P. lavamentivorans DS-1, Parvibaculum lavamentivorans DS-1, Parvibaculum lavamentivorans str. DS-1, Parvibaculum lavamentivorans strain DS-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.