STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plav_1839TIGRFAM: P-type conjugative transfer protein TrbJ; KEGG: mlo:mlr6401 conjugal transfer protein TrbJ. (241 aa)    
Predicted Functional Partners:
Plav_1838
SMART: AAA ATPase; KEGG: mlo:mlr6400 conjugal transfer protein trbE.
   
 0.953
Plav_1837
KEGG: aav:Aave_0728 putative conjugal transfer TrbD transmembrane protein.
 
   
 0.942
Plav_1836
PFAM: Conjugal transfer protein TrbC; KEGG: pde:Pden_3195 conjugal transfer protein TrbC.
 
   
 0.941
Plav_1834
PFAM: CopG domain protein DNA-binding domain protein; KEGG: rme:Rmet_1549 CopG-like DNA-binding.
 
     0.928
Plav_1840
TIGRFAM: P-type conjugative transfer protein TrbL; PFAM: TrbL/VirB6 plasmid conjugal transfer protein; KEGG: mlo:mlr6402 conjugal transfer protein; TrbL.
 
   
 0.926
Plav_1841
PFAM: Conjugal transfer protein; KEGG: mlo:mlr6403 conjugal transfer protein trbF.
 
   
 0.926
Plav_1833
PFAM: TRAG family protein; KEGG: mlo:mlr6395 conjugal transfer protein traG.
 
   
 0.924
Plav_1842
TIGRFAM: P-type conjugative transfer protein TrbG; PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: mlo:mlr6404 conjugal transfer protein trbG.
 
   
 0.919
Plav_1843
PFAM: Ubiquitin interacting domain protein; conjugation TrbI family protein; KEGG: mlo:mlr6405 conjugal transfer protein trbI.
 
   
 0.914
Plav_1844
KEGG: mlo:msr6406 hypothetical protein.
 
     0.914
Your Current Organism:
Parvibaculum lavamentivorans
NCBI taxonomy Id: 402881
Other names: P. lavamentivorans DS-1, Parvibaculum lavamentivorans DS-1, Parvibaculum lavamentivorans str. DS-1, Parvibaculum lavamentivorans strain DS-1
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