STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plav_1892TIGRFAM: urea amidolyase related protein; Urea carboxylase; PFAM: biotin/lipoyl attachment domain-containing protein; Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: gbe:GbCGDNIH1_1745 UreA carboxylase. (1205 aa)    
Predicted Functional Partners:
Plav_1893
TIGRFAM: Allophanate hydrolase; PFAM: Amidase; KEGG: nmu:Nmul_A0944 amidase.
  
 0.999
Plav_0834
PFAM: regulatory protein IclR; KEGG: vei:Veis_3062 regulatory proteins, IclR.
  
    0.993
Plav_1798
PFAM: regulatory protein IclR; KEGG: bpe:BP0674 probable transcriptional regulator.
  
    0.993
Plav_2692
Carbamoyl-phosphate synthase L chain ATP-binding; PFAM: carboxyl transferase; biotin/lipoyl attachment domain-containing protein; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: rpa:RPA1450 putative pyruvate carboxylase.
 
0.980
Plav_1890
KEGG: rpe:RPE_1217 hypothetical protein.
   
 0.962
Plav_1891
KEGG: rle:pRL90292 hypothetical protein.
   
 0.962
Plav_3291
acetyl-CoA carboxylase, biotin carboxyl carrier protein; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.
 
 
 0.949
Plav_1887
KEGG: rle:pRL90288 putative transport protein.
 
   
 0.885
Plav_1889
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gbe:GbCGDNIH1_1748 ABC transporter ATP-binding protein.
 
   
 0.862
accD
acetyl-CoA carboxylase, carboxyl transferase, beta subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family.
 
 0.850
Your Current Organism:
Parvibaculum lavamentivorans
NCBI taxonomy Id: 402881
Other names: P. lavamentivorans DS-1, Parvibaculum lavamentivorans DS-1, Parvibaculum lavamentivorans str. DS-1, Parvibaculum lavamentivorans strain DS-1
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