STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plav_1917PFAM: glycosyl transferase family 2; KEGG: ava:Ava_0844 glycosyl transferase, family 2. (317 aa)    
Predicted Functional Partners:
Plav_1916
PFAM: glycosyl transferase group 1; KEGG: sru:SRU_0281 glycosyl transferase, group 1 family protein.
 
 
 0.856
Plav_1919
PFAM: glycosyl transferase group 1; KEGG: rba:RB8313 putative glycosyl transferase (WbnE).
 
 
 0.806
Plav_1925
PFAM: sugar transferase; KEGG: mes:Meso_1154 sugar transferase.
 
  
 0.770
Plav_3349
PFAM: glycosyl transferase family 2; KEGG: rrs:RoseRS_2382 glycosyl transferase, family 2.
  
     0.729
Plav_1918
PFAM: O-antigen polymerase; KEGG: vpa:VPA1409 hypothetical protein.
  
  
 0.699
Plav_1932
PFAM: sugar transferase; KEGG: eca:ECA1420 undecaprenyl-phosphate galactosephosphotransferase.
 
  
 0.540
Plav_1906
Non-specific protein-tyrosine kinase; PFAM: lipopolysaccharide biosynthesis protein; KEGG: hypothetical protein.
 
  
 0.521
Plav_2999
Non-specific protein-tyrosine kinase; PFAM: lipopolysaccharide biosynthesis protein; KEGG: mag:amb1450 succinoglycan biosynthesis transport protein ExoP.
 
  
 0.505
Plav_3344
PFAM: glycosyl transferase family 2; KEGG: sit:TM1040_0077 glycosyl transferase, family 2.
 
  
 0.490
Plav_3000
PFAM: polysaccharide export protein; KEGG: rpd:RPD_4418 polysaccharide export protein.
 
  
 0.488
Your Current Organism:
Parvibaculum lavamentivorans
NCBI taxonomy Id: 402881
Other names: P. lavamentivorans DS-1, Parvibaculum lavamentivorans DS-1, Parvibaculum lavamentivorans str. DS-1, Parvibaculum lavamentivorans strain DS-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.