STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gmd-2NAD-dependent epimerase/dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose. (364 aa)    
Predicted Functional Partners:
Plav_1925
PFAM: sugar transferase; KEGG: mes:Meso_1154 sugar transferase.
  
  
 0.994
Plav_1927
TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type II; Nucleotidyl transferase; Cupin domain protein; Cupin 2 conserved barrel domain protein; KEGG: tbd:Tbd_1239 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase.
 
 
 0.968
gmd
GDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.
 
  
 
0.951
Plav_3348
PFAM: NAD-dependent epimerase/dehydratase; KEGG: sat:SYN_02652 CDP-4-dehydro-6-deoxy-D-gulose 4-reductase.
 
 0.951
Plav_1906
Non-specific protein-tyrosine kinase; PFAM: lipopolysaccharide biosynthesis protein; KEGG: hypothetical protein.
  
  
 0.670
Plav_2999
Non-specific protein-tyrosine kinase; PFAM: lipopolysaccharide biosynthesis protein; KEGG: mag:amb1450 succinoglycan biosynthesis transport protein ExoP.
  
  
 0.670
Plav_1922
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: ade:Adeh_0221 NAD-dependent epimerase/dehydratase.
  
 
0.640
Plav_1932
PFAM: sugar transferase; KEGG: eca:ECA1420 undecaprenyl-phosphate galactosephosphotransferase.
  
  
 0.566
Plav_0202
PFAM: NAD-dependent epimerase/dehydratase; KEGG: rsq:Rsph17025_2793 NAD-dependent epimerase/dehydratase.
  
 
 0.448
Plav_0823
PFAM: NAD-dependent epimerase/dehydratase; NmrA family protein; KEGG: rso:RSc3335 hypothetical protein.
  
 
 0.448
Your Current Organism:
Parvibaculum lavamentivorans
NCBI taxonomy Id: 402881
Other names: P. lavamentivorans DS-1, Parvibaculum lavamentivorans DS-1, Parvibaculum lavamentivorans str. DS-1, Parvibaculum lavamentivorans strain DS-1
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