STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plav_1943PFAM: 20S proteasome A and B subunits; KEGG: bbt:BBta_5276 hypothetical protein. (247 aa)    
Predicted Functional Partners:
Plav_1941
PFAM: protein of unknown function DUF403; KEGG: rpe:RPE_2296 protein of unknown function DUF403.
 
    0.938
Plav_1942
PFAM: transglutaminase domain protein; transglutaminase domain protein; KEGG: bbt:BBta_5275 hypothetical protein.
 
    0.932
Plav_1940
PFAM: protein of unknown function DUF404; protein of unknown function DUF407; KEGG: rpd:RPD_2240 protein of unknown function DUF404.
  
 0.927
Plav_1944
Hypothetical protein.
       0.570
Plav_1945
Hypothetical protein.
       0.570
Your Current Organism:
Parvibaculum lavamentivorans
NCBI taxonomy Id: 402881
Other names: P. lavamentivorans DS-1, Parvibaculum lavamentivorans DS-1, Parvibaculum lavamentivorans str. DS-1, Parvibaculum lavamentivorans strain DS-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.