STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plav_1953SMART: helix-turn-helix domain protein; KEGG: rru:Rru_A3065 transcriptional regulator, XRE family. (102 aa)    
Predicted Functional Partners:
Plav_1954
KEGG: pde:Pden_0484 RelE-like cytotoxic translational repressor of toxin-antitoxin stability system.
 
 
 0.966
Plav_3603
Prevent-host-death family protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
 
 
 
 0.735
Plav_3644
KEGG: cbu:CBUA0027 DNA-binding protein.
  
     0.728
Plav_3645
PFAM: protein of unknown function DUF1044; KEGG: shn:Shewana3_1245 protein of unknown function DUF1044.
 
  
 0.704
Plav_1617
TIGRFAM: addiction module toxin, RelE/StbE family; PFAM: plasmid stabilization system; KEGG: xft:PD1184 toxin-like protein.
 
 
 
 0.522
Plav_2302
PFAM: Ferritin Dps family protein; KEGG: mfa:Mfla_1120 ferritin and Dps; Belongs to the Dps family.
   
    0.499
Plav_2374
PFAM: isochorismatase hydrolase; KEGG: rle:RL0306 putative isochorismatase family protein.
   
    0.491
Plav_2382
PFAM: isochorismatase hydrolase; KEGG: ppu:PP_3976 hydrolase, isochorismatase family.
   
    0.491
Plav_0635
KEGG: ava:Ava_4644 hypothetical protein.
  
     0.454
Plav_1955
PFAM: ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: pat:Patl_0102 ATPase associated with various cellular activities, AAA_5.
       0.443
Your Current Organism:
Parvibaculum lavamentivorans
NCBI taxonomy Id: 402881
Other names: P. lavamentivorans DS-1, Parvibaculum lavamentivorans DS-1, Parvibaculum lavamentivorans str. DS-1, Parvibaculum lavamentivorans strain DS-1
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