STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plav_1996PFAM: Lytic transglycosylase catalytic; KEGG: gox:GOX2386 hypothetical protein. (310 aa)    
Predicted Functional Partners:
Plav_1995
PFAM: ferredoxin-dependent glutamate synthase; KEGG: hch:HCH_00332 glutamate synthase domain 2; Belongs to the glutamate synthase family.
       0.703
Plav_0199
PFAM: Glutathione S-transferase domain; KEGG: mag:amb3942 glutathione S-transferase.
  
     0.572
Plav_2184
Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.
 
    0.569
Plav_2570
KEGG: rpb:RPB_3777 flagellar basal-body rod protein FlgB.
 
  
 0.550
Plav_1997
PFAM: N-formylglutamate amidohydrolase; KEGG: mag:amb2177 N-formylglutamate amidohydrolase.
 
     0.519
lptD
Organic solvent tolerance protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
  
  
 0.494
Plav_3339
PFAM: permease YjgP/YjgQ family protein; KEGG: mag:amb3906 predicted permease.
  
     0.492
Plav_0195
PFAM: protein of unknown function DUF1239; KEGG: bja:blr0720 hypothetical protein.
  
     0.483
Plav_2561
TIGRFAM: flagellar basal-body rod protein FlgG; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: mmr:Mmar10_1947 flagellar basal-body rod protein FlgG; Belongs to the flagella basal body rod proteins family.
 
 
 0.469
Plav_2887
PFAM: MotA/TolQ/ExbB proton channel; KEGG: rru:Rru_A1842 MotA, chemotaxis (motility protein A.
 
    0.451
Your Current Organism:
Parvibaculum lavamentivorans
NCBI taxonomy Id: 402881
Other names: P. lavamentivorans DS-1, Parvibaculum lavamentivorans DS-1, Parvibaculum lavamentivorans str. DS-1, Parvibaculum lavamentivorans strain DS-1
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