STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plav_2002KEGG: abo:ABO_1014 hypothetical protein. (277 aa)    
Predicted Functional Partners:
Plav_2001
KEGG: mgm:Mmc1_0538 hypothetical protein.
 
     0.914
Plav_1117
KEGG: abo:ABO_1242 hypothetical protein.
  
 0.890
Plav_2006
KEGG: azo:azo2253 probable exporter of RND superfamily.
  
 0.713
Plav_1155
KEGG: mpt:Mpe_A0397 exporters of the RND superfamily.
  
 0.659
Plav_1361
PFAM: protein of unknown function DUF1302; KEGG: cps:CPS_3432 hypothetical protein.
 
    0.654
Plav_1023
PFAM: protein of unknown function DUF1302; KEGG: pau:PA14_19810 hypothetical protein.
 
    0.637
Plav_0466
PFAM: protein of unknown function DUF1302; KEGG: cps:CPS_3432 hypothetical protein.
 
    0.628
Plav_1534
KEGG: azo:azo2253 probable exporter of RND superfamily.
  
 0.628
Plav_0467
PFAM: protein of unknown function DUF1302; KEGG: pau:PA14_19810 hypothetical protein.
 
    0.627
Plav_0087
PFAM: protein of unknown function DUF1302; KEGG: pau:PA14_13130 hypothetical protein.
 
    0.622
Your Current Organism:
Parvibaculum lavamentivorans
NCBI taxonomy Id: 402881
Other names: P. lavamentivorans DS-1, Parvibaculum lavamentivorans DS-1, Parvibaculum lavamentivorans str. DS-1, Parvibaculum lavamentivorans strain DS-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.