STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plav_2004PFAM: Taurine catabolism dioxygenase TauD/TfdA; KEGG: reh:H16_A0037 alpha-ketoglutarate-dependent taurine dioxygenase. (278 aa)    
Predicted Functional Partners:
Plav_2777
Phosphoadenosine phosphosulfate reductase; Reduction of activated sulfate into sulfite.
     
 0.903
Plav_0889
PFAM: nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: bms:BR0181 sulfite reductase (NADPH) hemoprotein beta-component.
     
 0.902
Plav_0310
TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; KEGG: vpa:VP3011 gamma-glutamyltranspeptidase.
     
  0.900
Plav_1569
TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; KEGG: mlo:mll6984 gamma-glutamyltranspeptidase.
     
  0.900
Plav_2989
PFAM: Rhodanese domain protein; KEGG: rsq:Rsph17025_0122 rhodanese domain protein.
    
  0.900
Plav_3279
PFAM: gamma-glutamyltranspeptidase; KEGG: acr:Acry_1628 gamma-glutamyltranspeptidase.
     
  0.900
Plav_2005
PFAM: Glutathione S-transferase domain; KEGG: bja:bll5700 hypothetical glutathione S-transferase like protein.
       0.723
Plav_2006
KEGG: azo:azo2253 probable exporter of RND superfamily.
       0.572
Plav_2003
Hypothetical protein.
       0.559
Plav_2002
KEGG: abo:ABO_1014 hypothetical protein.
       0.422
Your Current Organism:
Parvibaculum lavamentivorans
NCBI taxonomy Id: 402881
Other names: P. lavamentivorans DS-1, Parvibaculum lavamentivorans DS-1, Parvibaculum lavamentivorans str. DS-1, Parvibaculum lavamentivorans strain DS-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.