STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plav_2012PFAM: nitroreductase; KEGG: bam:Bamb_6027 nitroreductase. (223 aa)    
Predicted Functional Partners:
Plav_2014
PFAM: sulfatase; KEGG: hne:HNE_1668 sulfatase family protein.
  
    0.541
Plav_2013
KEGG: hne:HNE_1437 hypothetical protein.
       0.536
ribB
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
 
 
 0.469
Plav_1787
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: nar:Saro_3865 glyoxalase/bleomycin resistance protein/dioxygenase.
 
  
 0.459
Plav_1504
PFAM: ABC transporter related; ABC-2 type transporter; SMART: AAA ATPase; KEGG: gsu:GSU2686 ABC transporter, ATP-binding protein.
  
  
 0.457
Plav_3446
PFAM: ABC transporter related; ABC-2 type transporter; SMART: AAA ATPase; KEGG: ajs:Ajs_2361 ABC transporter related.
  
  
 0.457
Plav_1964
PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: bra:BRADO6238 glutamate synthase [NADPH] large chain (NADPH-GOGAT).
     
 0.442
Plav_1080
PFAM: Abortive infection protein; KEGG: ecs:ECs1085 hypothetical membrane protein.
  
  
 0.406
Plav_1896
PFAM: Abortive infection protein; KEGG: btl:BALH_4146 CAAX amino terminal protease family.
  
  
 0.406
Plav_0401
PFAM: ABC-2 type transporter; KEGG: mmr:Mmar10_0486 ABC-2 type transporter.
  
  
 0.405
Your Current Organism:
Parvibaculum lavamentivorans
NCBI taxonomy Id: 402881
Other names: P. lavamentivorans DS-1, Parvibaculum lavamentivorans DS-1, Parvibaculum lavamentivorans str. DS-1, Parvibaculum lavamentivorans strain DS-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.