STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plav_2026TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: hydrolase, haloacid dehalogenase-like family; K07025 putative hydrolase of the HAD superfamily. (203 aa)    
Predicted Functional Partners:
Plav_0166
PFAM: aldehyde dehydrogenase; KEGG: mlo:mlr6969 aldehyde dehydrogenase.
  
 
 0.903
Plav_1859
PFAM: aldehyde dehydrogenase; KEGG: hne:HNE_3109 aldehyde dehydrogenase family protein; Belongs to the aldehyde dehydrogenase family.
  
 
 0.903
rpmJ
KEGG: nwi:Nwi_0983 ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family.
 
   
 0.673
Plav_2028
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: nwi:Nwi_0984 TPR repeat protein.
       0.528
Plav_2910
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
     
 0.522
Plav_2027
PFAM: Saccharopine dehydrogenase; KEGG: ilo:IL1477 hypothetical protein.
       0.517
Plav_2029
PFAM: alpha/beta hydrolase fold; KEGG: nha:Nham_1217 alpha/beta hydrolase fold.
  
  
 0.477
ribB
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
  
  
 0.455
Plav_0615
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: sme:SMb21148 putative oxidoreductase protein.
 
    0.430
Plav_1728
PFAM: Epoxide hydrolase domain protein; KEGG: hne:HNE_2052 epoxide hydrolase.
 
  
 0.417
Your Current Organism:
Parvibaculum lavamentivorans
NCBI taxonomy Id: 402881
Other names: P. lavamentivorans DS-1, Parvibaculum lavamentivorans DS-1, Parvibaculum lavamentivorans str. DS-1, Parvibaculum lavamentivorans strain DS-1
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