STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plav_2090PFAM: protein of unknown function DUF1013; KEGG: bra:BRADO6589 hypothetical protein. (242 aa)    
Predicted Functional Partners:
lysS
TIGRFAM: lysyl-tRNA synthetase; PFAM: Lysyl-tRNA synthetase class 1c; KEGG: nwi:Nwi_0151 lysyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
    0.771
Plav_2446
PFAM: protein of unknown function DUF1321; KEGG: bbt:BBta_6105 hypothetical protein.
  
   
 0.750
rpmE
Ribosomal protein L31; Binds the 23S rRNA; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily.
      0.740
Plav_1248
PFAM: import inner membrane translocase subunit Tim44; KEGG: nha:Nham_0117 import inner membrane translocase, subunit Tim44.
  
     0.734
Plav_1278
TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III delta; KEGG: mag:amb0029 DNA polymerase III.
  
     0.720
Plav_2436
PFAM: UvrD/REP helicase; KEGG: ret:RHE_CH02819 DNA helicase II protein.
 
      0.687
Plav_3622
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: sme:SMc01110 DNA-binding protein.
  
     0.684
Plav_2034
KEGG: bbt:BBta_6866 hypothetical protein; Belongs to the UPF0335 family.
  
   
 0.681
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
  
     0.673
Plav_1635
PFAM: Disulphide bond formation protein DsbB; KEGG: rpc:RPC_0627 disulphide bond formation protein DsbB.
  
     0.672
Your Current Organism:
Parvibaculum lavamentivorans
NCBI taxonomy Id: 402881
Other names: P. lavamentivorans DS-1, Parvibaculum lavamentivorans DS-1, Parvibaculum lavamentivorans str. DS-1, Parvibaculum lavamentivorans strain DS-1
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