STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plav_2236PFAM: NUDIX hydrolase; KEGG: mmr:Mmar10_0727 NUDIX hydrolase. (216 aa)    
Predicted Functional Partners:
Plav_2235
PFAM: protein of unknown function DUF1285; KEGG: psb:Psyr_1659 protein of unknown function DUF1285.
      0.900
Plav_2237
PFAM: Polynucleotide adenylyltransferase region; KEGG: tRNA nucleotidyltransferase (CCA-adding enzyme); Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
      0.626
Plav_2234
PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: mag:amb4161 MoxR-like ATPase.
       0.605
Plav_2232
TIGRFAM: conserved hypothetical membrane protein; KEGG: rpc:RPC_0914 double-transmembrane region-like.
       0.602
Plav_2233
PFAM: protein of unknown function DUF58; KEGG: mag:amb3863 hypothetical protein.
       0.602
Plav_2231
KEGG: rpd:RPD_1292 hypothetical protein.
       0.596
Plav_2230
PFAM: protein of unknown function UPF0060; KEGG: nwi:Nwi_1459 hypothetical protein.
       0.460
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
     
 0.427
Plav_2238
Hypothetical protein.
       0.409
Plav_2239
KEGG: yen:YE1502 putative lipoprotein.
       0.409
Your Current Organism:
Parvibaculum lavamentivorans
NCBI taxonomy Id: 402881
Other names: P. lavamentivorans DS-1, Parvibaculum lavamentivorans DS-1, Parvibaculum lavamentivorans str. DS-1, Parvibaculum lavamentivorans strain DS-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.