STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plav_2310PFAM: protein of unknown function DUF1022; KEGG: rru:Rru_A1980 protein of unknown function DUF1022. (335 aa)    
Predicted Functional Partners:
Plav_2309
KEGG: acr:Acry_1264 hypothetical protein.
 
     0.901
Plav_0205
PFAM: glycosyl transferase group 1; KEGG: hne:HNE_0425 glycosyl transferase, group 1 family protein.
 
     0.777
Plav_2308
KEGG: gbe:GbCGDNIH1_0635 hypothetical cytosolic protein.
       0.688
Plav_0625
Three-deoxy-D-manno-octulosonic-acid transferase domain protein; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.
 
     0.642
Plav_3493
PFAM: Pyrrolo-quinoline quinone; KEGG: mag:amb1343 WD40-like repeat.
  
     0.575
Plav_2266
PFAM: regulatory protein TetR; KEGG: rru:Rru_A3282 hypothetical protein.
  
     0.561
Plav_2053
PFAM: ABC-1 domain protein; KEGG: hne:HNE_0567 ABC1 family protein.
  
     0.550
Plav_2311
PFAM: regulatory protein AsnC/Lrp family; KEGG: sit:TM1040_0615 transcriptional regulator, AsnC family.
       0.550
Plav_1279
KEGG: sal:Sala_3019 hypothetical protein.
  
     0.539
lpxK
Tetraacyldisaccharide 4'-kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).
 
     0.522
Your Current Organism:
Parvibaculum lavamentivorans
NCBI taxonomy Id: 402881
Other names: P. lavamentivorans DS-1, Parvibaculum lavamentivorans DS-1, Parvibaculum lavamentivorans str. DS-1, Parvibaculum lavamentivorans strain DS-1
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