STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plav_2362PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sme:SMb20871 putative dehydrogenasereductase, short-chain dehydrogenase/reductase protein. (249 aa)    
Predicted Functional Partners:
Plav_2278
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rru:Rru_A2218 short-chain dehydrogenase/reductase SDR.
  
     0.677
Plav_2363
PFAM: alpha/beta hydrolase fold; KEGG: rle:RL2967 putative non-heme chloroperoxidase.
  
   0.613
Plav_3360
TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; KEGG: mag:amb2105 S-malonyltransferase.
 
 
 0.509
Plav_2361
TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: sme:SMb20698 putative transport protein, similar to E. coli multidrug resistance protein EmrB.
     
 0.479
Plav_2360
PFAM: secretion protein HlyD family protein; KEGG: sme:SMb20699 putative protein secretion protein, HlyD family, similar to E. coli EmrK.
       0.476
Plav_3651
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pau:PA14_01430 putative short chain dehydrogenase.
  
 
 
 0.456
Plav_0015
PFAM: Ankyrin; KEGG: sru:SRU_2404 hypothetical protein.
   
 0.442
Plav_0360
Steryl-sulfatase; PFAM: sulfatase; KEGG: hne:HNE_1667 sulfatase family protein.
   
 
 0.429
Plav_1131
PFAM: sulfatase; KEGG: sulfatase family protein.
   
 
 0.429
Plav_2014
PFAM: sulfatase; KEGG: hne:HNE_1668 sulfatase family protein.
   
 
 0.429
Your Current Organism:
Parvibaculum lavamentivorans
NCBI taxonomy Id: 402881
Other names: P. lavamentivorans DS-1, Parvibaculum lavamentivorans DS-1, Parvibaculum lavamentivorans str. DS-1, Parvibaculum lavamentivorans strain DS-1
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