STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plav_2504PFAM: Taurine catabolism dioxygenase TauD/TfdA; KEGG: bra:BRADO4030 putative TauD/TfdA family dioxygenase. (285 aa)    
Predicted Functional Partners:
Plav_2777
Phosphoadenosine phosphosulfate reductase; Reduction of activated sulfate into sulfite.
     
 0.903
Plav_0889
PFAM: nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; KEGG: bms:BR0181 sulfite reductase (NADPH) hemoprotein beta-component.
     
 0.902
Plav_0310
TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; KEGG: vpa:VP3011 gamma-glutamyltranspeptidase.
     
  0.900
Plav_1569
TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; KEGG: mlo:mll6984 gamma-glutamyltranspeptidase.
     
  0.900
Plav_2989
PFAM: Rhodanese domain protein; KEGG: rsq:Rsph17025_0122 rhodanese domain protein.
    
  0.900
Plav_3279
PFAM: gamma-glutamyltranspeptidase; KEGG: acr:Acry_1628 gamma-glutamyltranspeptidase.
     
  0.900
Plav_2503
Major facilitator superfamily MFS_1; PFAM: proton/sugar symporter LacY; nucleoside:H symporter; major facilitator superfamily MFS_1; KEGG: mag:amb2280 permease of the major facilitator superfamily.
  
    0.784
Plav_2501
PFAM: aminoglycoside phosphotransferase; KEGG: hypothetical protein.
     
 0.601
Plav_2502
KEGG: hypothetical protein.
       0.590
Plav_2500
KEGG: hne:HNE_2926 hypothetical protein.
       0.582
Your Current Organism:
Parvibaculum lavamentivorans
NCBI taxonomy Id: 402881
Other names: P. lavamentivorans DS-1, Parvibaculum lavamentivorans DS-1, Parvibaculum lavamentivorans str. DS-1, Parvibaculum lavamentivorans strain DS-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.