STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plav_2507PFAM: regulatory protein ArsR; KEGG: transcriptional regulator, ArsR family. (120 aa)    
Predicted Functional Partners:
Plav_2506
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: reu:Reut_A2755 glyoxalase/bleomycin resistance protein/dioxygenase.
 
    0.831
Plav_2508
PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: mes:Meso_4061 hypothetical protein.
  
  
 0.798
Plav_2391
PFAM: regulatory protein ArsR; KEGG: bja:blr7359 transcriptional regulatory protein.
  
     0.663
Plav_2505
PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rxy:Rxyl_0255 alcohol dehydrogenase, zinc-binding protein.
       0.576
Plav_3201
PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: pol:Bpro_1366 hypothetical protein.
 
  
 0.460
Plav_2503
Major facilitator superfamily MFS_1; PFAM: proton/sugar symporter LacY; nucleoside:H symporter; major facilitator superfamily MFS_1; KEGG: mag:amb2280 permease of the major facilitator superfamily.
       0.405
Plav_2504
PFAM: Taurine catabolism dioxygenase TauD/TfdA; KEGG: bra:BRADO4030 putative TauD/TfdA family dioxygenase.
       0.405
Your Current Organism:
Parvibaculum lavamentivorans
NCBI taxonomy Id: 402881
Other names: P. lavamentivorans DS-1, Parvibaculum lavamentivorans DS-1, Parvibaculum lavamentivorans str. DS-1, Parvibaculum lavamentivorans strain DS-1
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