STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plav_2547PFAM: short-chain dehydrogenase/reductase SDR; KEGG: hne:HNE_3131 oxidoreductase, short chain dehydrogenase/reductase family protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (263 aa)    
Predicted Functional Partners:
Plav_3360
TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; KEGG: mag:amb2105 S-malonyltransferase.
  
 
 0.505
Plav_2546
PFAM: regulatory protein TetR; KEGG: hne:HNE_0025 transcriptional regulator, TetR family.
       0.495
Plav_2545
KEGG: rle:RL0598 hypothetical protein.
       0.493
Plav_0015
PFAM: Ankyrin; KEGG: sru:SRU_2404 hypothetical protein.
   
 0.442
Plav_0360
Steryl-sulfatase; PFAM: sulfatase; KEGG: hne:HNE_1667 sulfatase family protein.
   
 
 0.429
Plav_1131
PFAM: sulfatase; KEGG: sulfatase family protein.
   
 
 0.429
Plav_2014
PFAM: sulfatase; KEGG: hne:HNE_1668 sulfatase family protein.
   
 
 0.429
Plav_2519
PFAM: sulfatase; KEGG: mlo:mlr3684 phosphonate monoester hydrolase.
   
 
 0.429
Plav_2621
PFAM: sulfatase; KEGG: cno:NT01CX_0300 probable sulfatase.
   
 
 0.429
Plav_3137
PFAM: sulfatase; KEGG: vei:Veis_0934 sulfatase.
   
 
 0.429
Your Current Organism:
Parvibaculum lavamentivorans
NCBI taxonomy Id: 402881
Other names: P. lavamentivorans DS-1, Parvibaculum lavamentivorans DS-1, Parvibaculum lavamentivorans str. DS-1, Parvibaculum lavamentivorans strain DS-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.