STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plav_2548HPP family protein; PFAM: CBS domain containing protein; HPP family protein?; KEGG: pde:Pden_0317 CBS domain containing protein. (391 aa)    
Predicted Functional Partners:
guaA
GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP.
  
  
 0.896
Plav_0778
PFAM: histone deacetylase superfamily; KEGG: mca:MCA2486 histone deacetylase/AcuC/AphA family protein.
  
  
 0.617
Plav_2549
PFAM: flagellar FlaF family protein; KEGG: rpd:RPD_1673 flagellar FlaF.
       0.503
Plav_2550
PFAM: flagellar FlbT family protein; KEGG: bja:blr5847 putative flagellar protein FlbT.
       0.503
Plav_3374
PFAM: Heavy metal transport/detoxification protein; KEGG: acr:Acry_3236 E1-E2 ATPase-associated domain protein.
 
     0.484
Plav_0502
PFAM: glutamine amidotransferase class-I; KEGG: azo:azo2531 conserved hypothetical protein.
  
  
 0.449
Plav_1369
PFAM: glutamine amidotransferase class-I; KEGG: bbt:BBta_0273 putative glutamine amidotransferase class-I.
  
  
 0.449
Plav_2546
PFAM: regulatory protein TetR; KEGG: hne:HNE_0025 transcriptional regulator, TetR family.
 
     0.448
Plav_2388
PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: lil:LA3214 hypothetical protein.
  
     0.433
Your Current Organism:
Parvibaculum lavamentivorans
NCBI taxonomy Id: 402881
Other names: P. lavamentivorans DS-1, Parvibaculum lavamentivorans DS-1, Parvibaculum lavamentivorans str. DS-1, Parvibaculum lavamentivorans strain DS-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.