STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plav_2613KEGG: ter:Tery_2105 sodium:galactoside symporter family protein. (453 aa)    
Predicted Functional Partners:
Plav_2611
PFAM: major facilitator superfamily MFS_1; KEGG: ter:Tery_2105 sodium:galactoside symporter family protein.
 
    
0.694
Plav_2612
PFAM: alpha/beta hydrolase fold; KEGG: rpb:RPB_2134 alpha/beta hydrolase.
  
    0.693
Plav_1870
PFAM: protein of unknown function DUF1365; KEGG: rru:Rru_A0724 protein of unknown function DUF1365.
 
  
 0.573
Plav_2610
PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: pfl:PFL_1586 hypothetical protein.
       0.428
Your Current Organism:
Parvibaculum lavamentivorans
NCBI taxonomy Id: 402881
Other names: P. lavamentivorans DS-1, Parvibaculum lavamentivorans DS-1, Parvibaculum lavamentivorans str. DS-1, Parvibaculum lavamentivorans strain DS-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.