STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plav_2811PFAM: ROK family protein; KEGG: sfu:Sfum_0489 ROK family protein. (299 aa)    
Predicted Functional Partners:
Plav_1927
TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase type II; Nucleotidyl transferase; Cupin domain protein; Cupin 2 conserved barrel domain protein; KEGG: tbd:Tbd_1239 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase.
    
 0.950
Plav_0292
PFAM: phosphoglucose isomerase (PGI); KEGG: rxy:Rxyl_2677 glucose-6-phosphate isomerase.
  
 
 0.947
Plav_0616
6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis; Belongs to the phosphofructokinase type A (PFKA) family.
    
 0.940
Plav_2947
TIGRFAM: fructose-1,6-bisphosphatase, class II; PFAM: GlpX family protein; KEGG: mes:Meso_0989 fructose-1,6-bisphosphatase, class II.
     
 0.929
glmS
Glucosamine--fructose-6-phosphate aminotransferase, isomerizing; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.
  
 
 0.923
Plav_2954
PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: mlo:mlr7593 glycosyl hydrolase.
    
 0.912
fbp
PFAM: Inositol phosphatase/fructose-16-bisphosphatase; KEGG: bbr:BB1929 fructose-1,6-bisphosphatase.
     
 0.905
Plav_0114
PFAM: PTS system fructose subfamily IIA component; KEGG: mag:amb4395 phosphotransferase system, mannose/fructose-specific component IIA.
    
 0.841
dapA
Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
  
  
 0.601
Plav_0541
TIGRFAM: trehalose synthase; trehalose synthase-fused possible maltokinase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: reu:Reut_B4228 alpha amylase, catalytic subdomain.
     
 0.525
Your Current Organism:
Parvibaculum lavamentivorans
NCBI taxonomy Id: 402881
Other names: P. lavamentivorans DS-1, Parvibaculum lavamentivorans DS-1, Parvibaculum lavamentivorans str. DS-1, Parvibaculum lavamentivorans strain DS-1
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.