STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plav_2829PFAM: protein of unknown function DUF983; KEGG: mes:Meso_1352 protein of unknown function DUF983. (141 aa)    
Predicted Functional Partners:
Plav_2828
PFAM: NUDIX hydrolase; KEGG: pat:Patl_2625 NUDIX hydrolase.
 
     0.729
Plav_0021
PFAM: protein of unknown function DUF1052; KEGG: hypothetical protein.
  
   
 0.696
ctaG
Cytochrome c oxidase assembly protein CtaG/Cox11; Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I; Belongs to the COX11/CtaG family.
 
     0.676
Plav_2827
PFAM: NUDIX hydrolase; KEGG: pat:Patl_2625 NUDIX hydrolase.
 
     0.663
Plav_3569
KEGG: bja:bll0688 hypothetical protein.
  
     0.654
Plav_0522
PFAM: conserved hypothetical protein; KEGG: ret:RHE_CH00582 hypothetical protein; Belongs to the UPF0262 family.
 
   
 0.611
rnr
Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.
       0.608
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
       0.608
Plav_0675
PFAM: Surfeit locus 1 family protein; KEGG: bra:BRADO1723 putative SURF1 family protein.
 
     0.537
Plav_0250
PFAM: cytochrome c class I; KEGG: rpd:RPD_3536 cytochrome c, class I.
 
     0.522
Your Current Organism:
Parvibaculum lavamentivorans
NCBI taxonomy Id: 402881
Other names: P. lavamentivorans DS-1, Parvibaculum lavamentivorans DS-1, Parvibaculum lavamentivorans str. DS-1, Parvibaculum lavamentivorans strain DS-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.