STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plav_2962PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: mes:Meso_0058 (2Fe-2S)-binding. (154 aa)    
Predicted Functional Partners:
Plav_2961
PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: mes:Meso_0059 aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding.
 
 0.998
Plav_2960
PFAM: molybdopterin dehydrogenase FAD-binding; KEGG: mlo:mll1127 carbon monoxide dehydrogenase chain C.
 
 0.997
Plav_2708
PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: acr:Acry_1968 carbon-monoxide dehydrogenase (acceptor).
 
 0.996
Plav_0124
PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: eli:ELI_11225 aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding.
 
 0.980
Plav_2956
KEGG: rsq:Rsph17025_0331 protein of unknown function DUF182.
 
  
 0.926
Plav_2957
PFAM: protein of unknown function DUF182; KEGG: rpe:RPE_1659 protein of unknown function DUF182.
 
  
 0.922
Plav_2955
PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; molybdopterin binding domain; KEGG: rpa:RPA3797 hypothetical protein.
 
  
 0.849
Plav_2963
PFAM: carbon monoxide dehydrogenase subunit G; KEGG: acr:Acry_0470 carbon monoxide dehydrogenase subunit G.
     0.715
Plav_2958
PFAM: VWA containing CoxE family protein; KEGG: mes:Meso_1291 VWA containing CoxE-like.
 
     0.627
Plav_2959
PFAM: ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: rru:Rru_A0968 ATPase associated with various cellular activities, AAA_5.
     
 0.587
Your Current Organism:
Parvibaculum lavamentivorans
NCBI taxonomy Id: 402881
Other names: P. lavamentivorans DS-1, Parvibaculum lavamentivorans DS-1, Parvibaculum lavamentivorans str. DS-1, Parvibaculum lavamentivorans strain DS-1
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