STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plav_3005KEGG: rpc:RPC_2569 hypothetical protein. (219 aa)    
Predicted Functional Partners:
Plav_1277
TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: sil:SPO0004 chromosome partitioning protein ParB; Belongs to the ParB family.
    
 
 0.792
Plav_2567
KEGG: mmr:Mmar10_1941 hypothetical protein.
 
     0.747
Plav_2697
KEGG: hne:HNE_2068 hypothetical protein.
  
     0.728
Plav_2920
PFAM: Ubiquinol-cytochrome C chaperone; KEGG: mag:amb2350 CBP3 protein, mitochondrial precursor.
  
     0.683
Plav_2557
KEGG: mmr:Mmar10_1951 hypothetical protein.
  
     0.682
Plav_2565
KEGG: mag:amb3499 hypothetical protein.
  
     0.665
Plav_1471
PFAM: protein of unknown function DUF610 YibQ; KEGG: nha:Nham_0526 protein of unknown function DUF610, YibQ.
  
     0.663
Plav_1596
TIGRFAM: MJ0042 family finger-like protein; KEGG: bbt:BBta_1175 hypothetical protein.
  
   
 0.657
Plav_3494
KEGG: rpc:RPC_2277 hypothetical protein.
  
     0.646
Plav_0867
KEGG: hne:HNE_0728 hypothetical protein.
  
     0.628
Your Current Organism:
Parvibaculum lavamentivorans
NCBI taxonomy Id: 402881
Other names: P. lavamentivorans DS-1, Parvibaculum lavamentivorans DS-1, Parvibaculum lavamentivorans str. DS-1, Parvibaculum lavamentivorans strain DS-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.